Compact-envelope bright solitary wave in a DNA double strand.
نویسندگان
چکیده
We study the nonlinear dynamics of a homogeneous DNA chain that is based on site-dependent finite stacking and pairing enthalpies. We introduce an extended nonlinear Schrödinger equation describing the dynamics of modulated wave in DNA model. We obtain envelope bright solitary waves with compact support as a solution. Analytical criteria of existence of this solution are derived. The stability of bright compactons is confirmed by numerical simulations of the exact equations of the lattice. The impact of the finite stacking energy is investigated, and we show that some of these compact bright solitary waves are robust, while others decompose very quickly depending on the finite stacking parameters.
منابع مشابه
The study of dose gamma rays of 192Ir source on DNA single strand break (SSB) and DNA double strand break (DSB) in soft tissue phantom
Introduction: Passage of ionizing radiation through the organs of living creatures develops clusters of damaged nucleotides inside the DNA rounds. 192Ir Gamma source is one of the most widely used sources in brachytherapy of cervical and prostate cancer. Thus, in this research, we investigated the flux of photons and its resulting secondary electrons, the single-strand break (S...
متن کاملDark-Bright Soliton Solutions for Some Evolution Equations
In this paper, the topological (dark) as well as non-topological (bright) soliton solutions of nonlinear evolution equations are obtained by the solitary wave ansatz method. Under some parameter conditions, exact solitary wave solutions are obtained. Note that, it is always useful and desirable to construct exact solutions especially soliton-type (dark, bright, kink, anti-kink, etc...) envelope...
متن کاملModeling the distribution of deposited energy by alpha particles from Radon 223 decay and its effect on DNA
The ionizing radiations, through physical and chemical processes, lead to simple and complex single- and double- strand breaks, as well as base lesions to the DNA. In this study, taking into account all the physical and chemical processes involved in the interaction of ionizing radiation with matter, the initial damage induced to DNA was evaluated for 5.7 MeV alpha-rays from Radon 223 isotope....
متن کاملMultipole solitary wave solutions of the higher-order nonlinear Schrödinger equation with quintic non-Kerr terms
We consider a high-order nonlinear Schrödinger (HNLS) equation with thirdand fourth-order dispersions, quintic non-Kerr terms, self steepening, and self-frequency-shift effects. The model applies to the description of ultrashort optical pulse propagation in highly nonlinear media. We propose a complex envelope function ansatz composed of single bright, single dark and the product of bright and ...
متن کاملMulti fluidity and Solitary wave stability in cold quark matter: core of dense astrophysical objects
Considering the magneto-hydrodynamic equations in a non-relativistic multi uid framework, we study the behavior of small amplitude perturbations in cold quark matter. Magneto-hydrodynamic equations, along with a suitable equation of state for the cold quark matter, are expanded using the reductive perturbation method. It is shown that in small amplitude approximation, such a medium should be co...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Physical review. E, Statistical, nonlinear, and soft matter physics
دوره 85 1 Pt 1 شماره
صفحات -
تاریخ انتشار 2012